We have expanded our collection by adding four Brassica genomes: Brassica rapa Fpc_v1.3, Brassica rapa Chiifu v3.5, Brassica oleracea v1.0, and Brassica napus Da-Ae. As usual, aligning chromosomes from different species using Persephone illustrates the structural rearrangements between the organisms....
Our system at https://web.persephonesoft.com has a couple of newly added cocoa genomes:Theobroma cacao (Criollo v2)Theobroma cacao (Matina v2) Comparing the cocoa genomes to the ones for coffee by using orthologous gene pairs reveals significant synteny. Synteny between chromosome 4 of cacao and...
We added genomes from the Drosophila genus: D.melanogaster, D.simulans, and D.yakuba. For now, the sequences are annotated using RefSeq gene models from NCBI. Aligning and comparing the genomic sequences by the ortholog genes reveals clear structural rearrangements. Synteny matrix comparing two full...
The newly published Beta vulgaris EL10_1.0 genome has been uploaded to our web portal to accompany another beet genome RefBeet-1.2.2. The two assemblies can be aligned by connecting gene ortholog pairs (bookmark) Please let us know if loading other tracks for...
With our colleagues from KAUST and other organizations, we are preparing the new publication on the analysis of 18 reference genomes from the "Rice Platinum Standard". The pre-print has been submitted to bioRxiv (Pan-genome inversion index reveals evolutionary insights into...