The new version of Web Persephone enables users to upload their genomes in a form of FASTA files. The file with sequences can contain one or more entries. The new assembly will be added to the map set tree alongside...
We added Medicago sativa (alfalfa) genome assemblies: medsa.CADL_HM342.gnm1.rVNY and medsa.XinJiangDaYe.gnm1.12MR from https://legumeinfo.org. Even with missing gene annotation on the CADL_HM342 sequences, it is possible to align the Medicago maps using the common tag markers, produced from the XinJangDaYe genome....
We added a new feature to the Web version of Persephone. It allows users to merge several quantitative tracks (e.g., RNA-seq coverage) into one. This makes it easier to compare the values. When the tracks are combined, the values are...
We have compiled a table that lists the features of the two versions of Persephone. This will help overview the milestones for the development roadmap. In general, we plan to port the most of the features of the Windows version...
The Desktop (Windows) version can now show a new type of track: the sequence conservation track (indicated by the red arrow in the pictures below). The visual elements in this type of track designate the regions linked by the ribbon-like...
In collaboration with our colleagues from KAUST, we have added 21 reference-quality rice genome assemblies to our web portal and to the demo Windows version. Os GJ-temp: IRGSP-1.0 (Nipponbare)Os GJ-subtrp: CHAO MEOOs GJ-trop1: AzucenaOs GJ-trop2: KETAN NANGKAOs cB: ARC 10497Os...
The map set property form in the Windows version of Persephone has now a new tab: Statistics. It lists a few metrics of the genomic sequences of the map set, such as the total sequence length, the percentage of the...
We are pleased to welcome Malaysian Palm Oil Board into the growing community of Persephone users. MPOB is the government agency entrusted to serve the country’s oil palm industry. Its main role is to promote and develop national objectives, policies and priorities for...
We have expanded our collection of public data sets by adding several reference genomes of soybean: Glycine max (soybean) and Glycine soja (wild soybean):G. max Wm82.a2.v1G. max Wm82.a4.v1G. max Zhonghuang 13G. max Zhonghuang 13 NCBI version (sequence only)G. max Lee...
We realized the need to have a specialized page listing the latest changes to our data loader application PersephoneShell. This tool is under active development, as we try to cover more of different data types. The new features of PersephoneShell...