synteny matrix Tag

Three Drosophila genomes added

30 December 2022 in General News, Web Version by admin

We added genomes from the Drosophila genus: D.melanogaster, D.simulans, and D.yakuba. For now, the sequences are annotated using RefSeq gene models...

A new feature in the desktop version: Export connector clusters as ribbons

05 January 2022 in Desktop Version, General News by admin

The synteny matrix in the desktop version of Persephone that visualizes the alignment of entire genomes has a useful feature...

Synteny matrix in the Web version

12 November 2021 in General News, Software Updates, Web Version by admin

We continue migrating the features originally implemented in the desktop application to the Web version. This time, we added the...

DIAMOND as a much faster alternative to BLASTP

27 October 2021 in General News by admin

Our loader application PersephoneShell used to upload the data to the Persephone database provides commands to calculate ortholog gene pairs....

Soybean genome browser (Wm82.a4.v1)

29 November 2019 in Desktop Version, Web Version by admin

In addition to an older Wm82.a2.v1, we have now the version Wm82.a4.v1 of the soybean genome. We added the new...