An 18-min Video Presentation On Web Persephone
Max Troukhan, Ph.D, is going to present this video talk at BiATA conference. It gives a quick overview of the major features of Persephone for the Web. https://www.youtube.com/watch?v=ie7LFV1Hu_Q ...
Max Troukhan, Ph.D, is going to present this video talk at BiATA conference. It gives a quick overview of the major features of Persephone for the Web. https://www.youtube.com/watch?v=ie7LFV1Hu_Q ...
The recent COVID-19 pandemic profile is changing, and now it is mostly dominated by the coronavirus strain called delta (B.1.617.2) that caused massive problems in India and other countries. We loaded its genome with the gene annotation to our web...
The new version of Web Persephone enables users to upload their genomes in a form of FASTA files. The file with sequences can contain one or more entries. The new assembly will be added to the map set tree alongside...
We added Medicago sativa (alfalfa) genome assemblies: medsa.CADL_HM342.gnm1.rVNY and medsa.XinJiangDaYe.gnm1.12MR from https://legumeinfo.org. Even with missing gene annotation on the CADL_HM342 sequences, it is possible to align the Medicago maps using the common tag markers, produced from the XinJangDaYe genome....
We have compiled a table that lists the features of the two versions of Persephone. This will help overview the milestones for the development roadmap. In general, we plan to port the most of the features of the Windows version...
In collaboration with our colleagues from KAUST, we have added 21 reference-quality rice genome assemblies to our web portal and to the demo Windows version. Os GJ-temp: IRGSP-1.0 (Nipponbare)Os GJ-subtrp: CHAO MEOOs GJ-trop1: AzucenaOs GJ-trop2: KETAN NANGKAOs cB: ARC 10497Os...
We are pleased to welcome Malaysian Palm Oil Board into the growing community of Persephone users. MPOB is the government agency entrusted to serve the country’s oil palm industry. Its main role is to promote and develop national objectives, policies and priorities for...
We have expanded our collection of public data sets by adding several reference genomes of soybean: Glycine max (soybean) and Glycine soja (wild soybean):G. max Wm82.a2.v1G. max Wm82.a4.v1G. max Zhonghuang 13G. max Zhonghuang 13 NCBI version (sequence only)G. max Lee...
We realized the need to have a specialized page listing the latest changes to our data loader application PersephoneShell. This tool is under active development, as we try to cover more of different data types. The new features of PersephoneShell...
We have added the data for 26 Zea mays reference genomes from the pan-genome project "Whole-Genome Assembly of the maize NAM founders" (https://nam-genomes.org/). The source files were downloaded from MaizeGDB.org. To help browsing this pan-genome data set and provide the...