Tomato Pangenome Added
We have added the tomato pangenome described in the paper Shi, C., Chen, S., Wang, J. et al. A tomato telomere-to-telomere super-pangenome empowers stress resilience breeding. Nat Genet (2026). https://doi.org/10.1038/s41588-026-02508-y. It has 20 annotated accessions.
One of the accessions is SL6.0. This is the updated version of the main reference tomato genome Heinz 1706.
The table below lists all the assemblies and their URLs in Persephone.
| Organism | Genome | #Maps |
|---|---|---|
| Solanum cheesmaniae | Tomato LA0166 | 12 |
| Solanum chilense | Tomato LA0458 | 12 |
| Solanum chmielewskii | Tomato LA1028 | 12 |
| Solanum corneliomulleri | Tomato LA0103 | 12 |
| Solanum galapagense | Tomato LA0426 | 12 |
| Solanum habrochaites | Tomato LA1777 | 12 |
| Solanum huaylasense | Tomato LA1982 | 12 |
| Solanum juglandifolium | Tomato LA2134 | 12 |
| Solanum lycopersicoides | Tomato LA2951 | 12 |
| Solanum lycopersicum | Tomato AC | 12 |
| Solanum lycopersicum | Tomato TS-60 | 12 |
| Solanum lycopersicum | Tomato SL6.0 | 12 |
| Solanum lycopersicum | Tomato TS-623 | 12 |
| Solanum lycopersicum | Tomato M82 | 12 |
| Solanum neorickii | Tomato LA0735 | 12 |
| Solanum ochranthum | Tomato LA2160 | 12 |
| Solanum pennellii | Tomato LA0716 | 12 |
| Solanum peruvianum | Tomato LA0111 | 12 |
| Solanum pimpinellifolium | Tomato LA2093 | 12 |
| Solanum sitiens | Tomato LA1974 | 12 |