Please check out the new genome added to Persephone. It has been downloaded from NCBI's RefSeq with the latest gene annotation generated just a week ago. A celery chromosome is aligned with a carrot chromosome based on orthologous gene links The...
The new version Wm82.a6.v1 of the soybean genome has been loaded to Persephone. The sequence has sometimes-substantial differences from the previous version (Wm82.a4.v1). The analysis of the new assembly by Mary Jane C. Espina et.al. has been published here. Our collection...
The Cannabis pangenome from the Michael Lab at the Salk Institute is now available in Persephone. With previously loaded genomes from NCBI and CSGDB, our collection has 97 assemblies with gene annotation. We also calculated orthologous gene pairs, which allow...
We have loaded 23 genomes of the genus Solanum from the project described at Solgenomics.net. The set includes species such as bitter tomato, African eggplant, melon-pear, and others. They can be opened in Persephone by following these direct links: Solanum abutiloides...
An Italian ryegrass (Lolium multiflorum) cultivar Rabiosa genome has been loaded to the system. The other ryegrass genomes can be linked by orthologous gene pairs. Use the Multimap tool to align individual maps. Open the list of Italian ryegrass maps by...
It was a pleasure collaborating with scientists from KAUST, INRAE, and other institutions on our recent publication in Nature, titled "Genome assembly of a diversity panel of Chenopodium quinoa." As part of this collaboration, we uploaded nine quinoa genomes to...
A small addition to the coffee pangenome data set: Coffea arabica var. Geisha. Chromosomes of C.arabica Geisha and Cara_1.0 are aligned using minimap2 Here is the direct link to this screen in Persephone: https://web.persephonesoft.com/?bookmark=B71E475989EAFC13B9D9E68A8FE6ACC9 The genome of Geisha variety was downloaded from Phytozome....
We have added a new set of SNPs for the wheat genome (IWGSC v2.1). The VCF file with the variants (ExomeCapture) was downloaded from https://zenodo.org/records/7852690. According to the description of the dataset at Variations - WHEAT URGI (inra.fr), "VCF file of 2,799,166...
In addition to the popular versions of the Human genome, such as GRCh38 or CHM13v2, we now host full assemblies for 96 individuals from the Human pangenome. The sequences were downloaded from NCBI. Unlike the well-annotated data sets, the sequences...
We added three genomes of ryegrass. Two of them (Kyuss_39 and Kyuss v2.0) are two versions of the same variety. The new version (Kyuss v2.0) represents a much-improved assembly of the doubled haploid perennial ryegrass (Lolium perenne L.) genotype Kyuss....