We have added two barley (Hordeum vulgare) genomes: morexV3 and 10TJ18_BPGv2. Both assemblies are available with gene annotation. The ortholog pairs link syntenic maps with wheat and oat chromosomes: Chromosomes from four genomes are aligned: morexV3, 10TJ18_BPGv2, wheat, and oat. The full...
We have added two large genomes for Allium cepa (onion) and Allium sativum (garlic). Both assemblies contain exceptionally long chromosomes, some exceeding 2 Gbp in length. We also located a genetic map for onion on Figshare that includes marker coordinates anchored...
The Persephone version, published recently, presents a few improvements. Handling BCF Files In addition to VCF, Persephone now directly supports BCF files imported into the main application. Users can add variants by referencing remote BCF files (with an index) or by loading...
We’re excited to announce the first inclusion of dog genomes in our collection, featuring the German Shepherd, Boxer, and Labrador Retriever. If you’d like to see additional canine breeds represented, we’d love to hear from you. The full list of available...
A new genome has been added to our collection of millet genomes: Eleusine coracana v.1. Finger millet chromosomes 6A and 7A are aligned to pearl millet chromosome 7. The colored ribbons are based on clustered ortholog links. We were surprised to find...
Please welcome new members of our genome collection: Mouse mm39 (Mus musculus, GRCm39) and Gorilla Kamilah_GGO_v0 (Gorilla gorilla). As usual, we identified orthologous gene pairs between these genomes and the human genomes. This has allowed us to produce synteny matrices...
Please check out the new genome added to Persephone. It has been downloaded from NCBI's RefSeq with the latest gene annotation generated just a week ago. A celery chromosome is aligned with a carrot chromosome based on orthologous gene links The...
The new version Wm82.a6.v1 of the soybean genome has been loaded to Persephone. The sequence has sometimes-substantial differences from the previous version (Wm82.a4.v1). The analysis of the new assembly by Mary Jane C. Espina et.al. has been published here. Our collection...
The Cannabis pangenome from the Michael Lab at the Salk Institute is now available in Persephone. With previously loaded genomes from NCBI and CSGDB, our collection has 97 assemblies with gene annotation. We also calculated orthologous gene pairs, which allow...
We have loaded 23 genomes of the genus Solanum from the project described at Solgenomics.net. The set includes species such as bitter tomato, African eggplant, melon-pear, and others. They can be opened in Persephone by following these direct links: Solanum abutiloides...