We have uploaded the version DM_v4.03 of the potato genome (Solanum tuberosum). Here is the list of tracks: Gene models predicted by GLEAN Public mRNA and EST from NCBI for potato were aligned to the genomic sequences using hisat2. This...
A new track with the latest annotation by NCBI's Gnomon (Feb.2019) pipeline has been added to Homo sapiens GRCh38 data set. See the bottom track on this picture. The gene models are sometimes quite different from the models in other tracks. Use...
We have loaded the potato genome (DM_v4.03) with multiple annotation tracks showing gene models, mapped markers and repeats. To help assessing the gene prediction quality, we downloaded 300,000 potato EST and mRNA sequences from NCBI and splice-aligned them to the genome....
This was our second year attending the largest Ag-Genomics meeting in the world in San Diego CA. Many thanks to all who stopped by our exhibit as well as those who attended Max Troukhan's talk at the IWGSC workshop (https://pag.confex.com/pag/xxvii/meetingapp.cgi/Paper/36359)...
We are pleased to welcome Mars Wrigley Confectionery into the growing community of Persephone users. We are looking forward to a fruitful collaboration that will make the work of Mars’ scientists more comfortable and productive, while allowing the Persephone team...
We thought, the users might want to rearrange the map set tree on the left by adding, removing or relocating the nodes. For example, as long as the current demo instance has a random set of genomes loaded, plant biologists may want to...
We have uploaded the wheat RH Maps (from IWGSC) with marker positions in cM. Persephone automatically links maps by common markers, so, if you align a chromosome map based on sequence with a corresponding genetic map, the tracks with markers...
According to wheatgenome.org, all data related to the reference sequence of bread wheat, IWGSC RefSeq v1.0, are available without restriction. We would like to use this opportunity to demonstrate the abilities of the web version of Persephone, a tool specifically designed to deal with...
We have loaded two versions of soybean genome. You now can compare individual chromosome pairs to see how genomic regions were rearranged during transition to the new version. Also, if you call Tools/Synteny matrix, you can see soybean genome duplication in a form...
Many thanks to all the visitors who stopped by our booth at PAG, as well as those who attended Max Troukhan’s talk at the IRIC workshop. If you did not get a chance to see our demo, don’t worry --...