Window to the World’s Genetic Information
We Animate Genomes
Persephone®
A multi-genome browser carefully crafted using latest technologies.
Bioinformatics Storefront
Persephone® is a modern way for bioinformaticians to present genomic data to biologists
Browse in Style
We focus on efficient storage, optimized transfer and fast rendering of genomic information. Navigating through data sets is fun. Genome is not static anymore. ``It's alive!``
Communicate
We would be happy to show what a professional genome browser is capable of. Just send us an email. Thank you
Customers
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Persephone has made a big difference to how we conduct our R&D. It has accelerated our molecular breeding efforts
Glendon Ascough, Research Director, Starke Ayres
Our company will benefit from implementing this integrated software solution, which allows interactive querying and visualization of the rapidly growing amount of Big Genomics Data.
Robert Graveland, Director of R&D, HZPC Holland
The Persephone genome browser impressed both our geneticists and bioinformaticians with its performance and user friendly interface.
Dr. Jakob de Vlieg, Head of the Computational Life Sciences, Bayer CropScience
Free Web Version
A free, fully-functional application is hosted on our website. The application serves the data from our demo database populated with many public genomes like wheat (IWGSC v2.1) or human (GRCh38). See the full list of available genomes on the right.
The latest news is updated in our blog.
The list of genomes that you can browse:
Aegilops umbellulata (TA1851)
Alopecurus myosuroides – blackgrass
Arabidopsis thaliana (TAIR10)
Avena sativa – oat
Bacteria (G.bethesdensis, P.thiaminolyticus, etc.)
Beta vulgaris (EL10_1.0, RefBeet-1.2.2) – beets
Brassica napus, Brassica oleracea, Brassica rapa
Camellia sinensis – black tea
Cenchrus americanus – pearl millet
Chloris virgata
Citrullus colocynthis – melon
Citrullus lanatus – wild melon
Citrus sinensis (v2.0) – sweet orange
Citrus maxima (v1) – pomelo
Citrus clementina (v1.0) – clementine
Rubus occidentalis (v3.0) – black raspberry
SARS-CoV-2 – multiple accessions of the coronavirus that causes COVID-19
Sorghum bicolor (v.3.1, , BTx623-IS320C)
Solanum licopersicum (SL4.0, SL3.0, FLA1.3, M821.3, SLT1.0) – tomato
Solanum tuberosum (DM.v4.03) – potato
Theobroma cacao (Matina v2, Criollo v2)
Triticum aestivum (IWGSC v1.0, IWGSC v2.1, ChineseSpring x Renan, RH_MAPS) – wheat
Vigna unguiculata (v1.2) – cowbean
Zebrafish (Danio rerio GRCz11)
Zea mays (AGPv4, Mo17) – corn.
Zea mays NAM lines (26 lines) – corn pangenome:
Zm-B73
Zm-B97
Zm-CML103
From Our Blog
A new video overview of Persephone has been released
13 November, 2024 in General NewsPersephone Software at ASHG 2024
12 November, 2024 in Events General News
Docker installation
The entire software package can be installed as a Docker container. It can run on a local machine or in the cloud
Responsive Interface
The software was designed with performance in mind, handling large datasets with ease, while keeping memory usage to a minimum.
Vertical and Horizontal Layouts
Maps can be displayed horizontally and vertically
In-House Installation
Persephone can be set up on premise. Our team will provide detailed instructions and will guide you through the installation process. We can also help with data loading and software integration.
Customer-led Design
Our team will work with you to develop the exact features you need.
Drag-and-drop
Open local files in multiple formats, then visualize them alongside all the other data.
User Friendly
Persephone’s intuitive interface has been built based on suggestions from multiple researchers.
Visual BLAST and minimap2
Users can run BLAST search and evaluate its results graphically, integrating them with the rest of the genomic data. With a push of a button, entire chromosomes can be aligned in real time by running minimap2.
Export
Save displayed genomic features in various formats, including FASTA, Genbank, and CSV.
Want to host Persephone on your infrastructure and serve your own data?
Talk to us about a license
BTW, if you are from a University, you will get a heavily-discounted rate!
On-premise or Cloud installs
Floating License
- Full control and access to database
- Support and training for installation
- Support and training for loading data
- (optional) pre-populated database
- (optional) Customizations available
Collaboration
- Dedicated software engineering resources
- Dedicated support, training, and customizations
- Full control of system
- (optional) customized to integrate with in-house pipelines
- (optional) pre-populated database
If you would like to host your own system and work with proprietary data, we will provide a Docker image with the entire software stack.
We will walk you through the installation and the use of the system.
