Window to the World’s Genetic Information
We Animate Genomes
Persephone®
A multi-genome browser carefully crafted using latest technologies.
Bioinformatics Storefront
Persephone® is a modern way for bioinformaticians to present genomic data to biologists
Browse in Style
We focus on efficient storage, optimized transfer and fast rendering of genomic information. Navigating through data sets is fun. Genome is not static anymore. ``It's alive!``
Communicate
We would be happy to show what a professional genome browser is capable of. Just send us an email. Thank you
Customers
Add your name to this list
Our company will benefit from implementing this integrated software solution, which allows interactive querying and visualization of the rapidly growing amount of Big Genomics Data.
Robert Graveland, Director of R&D, HZPC Holland
The Persephone genome browser impressed both our geneticists and bioinformaticians with its performance and user friendly interface.
Dr. Jakob de Vlieg, Head of the Computational Life Sciences, Bayer CropScience
Free Web Version
A free, fully-functional application is hosted on our website. The application serves the data from our demo database populated with many public genomes like wheat (IWGSC v2.1) or human (GRCh38). See the full list of available genomes on the right.
The latest news is updated in our blog.
The original version of Persephone was developed for Windows desktops. Please be aware that most of its functionality has since been migrated to the web version, and we intend to phase out support for the desktop application. Additionally, the web version includes many new features not available on the desktop. The link to the old desktop version is provided here for reference only.
Free Windows version (discontinued)
The latest news on the desktop version is updated in our blog.
The list of genomes that you can browse:
Aegilops umbellulata (TA1851)
Alopecurus myosuroides – blackgrass
Arabidopsis thaliana (TAIR10)
Avena sativa – oat
Bacteria (G.bethesdensis, P.thiaminolyticus, etc.)
Beta vulgaris (EL10_1.0, RefBeet-1.2.2) – beets
Brassica napus, Brassica oleracea, Brassica rapa
Camellia sinensis – black tea
Cenchrus americanus – pearl millet
Chloris virgata
Citrullus colocynthis – melon
Citrullus lanatus – wild melon
Citrus sinensis (v2.0) – sweet orange
Citrus maxima (v1) – pomelo
Citrus clementina (v1.0) – clementine
Coffee (Coffea arabica Cara_1.0, Coffea canephora DH200-94, Coffea eugenioides Ceug_1.0, Coffea humblotiana Baill RD_Cohum_1.0)
Conifers (P.taeda_v2.01, Picea glauca, Larix sibirica, Picea abies)
Drosophila (D.melanogaster rel.6, D.simulans Prin_Dsim_3.1, D.yakuba Prin_Dyak_Tai18E2_2.1)
Echinochloa colona, Echinochloa crusgalli, Echinochloa oryzicola
Eleusine indica
Glycine max (Wm82.a2.v1, Wm82.a4.v1, Zhonghuang 13, G.max Lee v1.1) – soybean
Glycine soja (G.soja PI483463,G.soja W05) – soybean
Homo sapiens (GRCh38.p12, GRCh37.p13, CHM13v2) – human
Lolium perenne – perennial ryegrass
Medicago sativa (Zhongmu No.1, medsa.CADL_HM342, medsa.XinJiangDaYe) – alfalfa
Medicago truncatula (M.truncatula A17_4.0)
Oryza sativa ssp. japonica (MSU_osa1r7) – rice japonica
Oryza sativa ssp.indica (ASM465v1) – rice indica
Palms (Date palm DPV01, PDK50, Barhee BC4, Elaeis guineensis p5)
Phages (Proteus Phage, Shigella phage, etc.)
Rice-Platinum standard (21 genomes):
Os GJ-temp: IRGSP-1.0 (Nipponbare)
Os GJ-subtrp: CHAO MEO
Os GJ-trop1: Azucena
Rubus occidentalis (v3.0) – black raspberry
SARS-CoV-2 – multiple accessions of the coronavirus that causes COVID-19
Sorghum bicolor (v.3.1, , BTx623-IS320C)
Solanum licopersicum (SL4.0, SL3.0, FLA1.3, M821.3, SLT1.0) – tomato
Solanum tuberosum (DM.v4.03) – potato
Theobroma cacao (Matina v2, Criollo v2)
Triticum aestivum (IWGSC v1.0, IWGSC v2.1, ChineseSpring x Renan, RH_MAPS) – wheat
Vigna unguiculata (v1.2) – cowbean
Zea mays (AGPv4, Mo17) – corn.
Zea mays NAM lines (26 lines) – corn pan-genome:
Zm-B73
Zm-B97
Zm-CML103
Zebrafish (Danio rerio GRCz11)
From Our Blog
Persephone Software at ASHG 2024
12 November, 2024 in Events General NewsNew data set: Wheat 2.8 M SNPs on IWGSC v2.1
23 May, 2024 in General News Web Version
Cloud Service
The complete system can be installed on Amazon Web Services, so no additional internal hardware is needed.
Responsive Interface
The software was designed with performance in mind, handling large datasets with ease, while keeping memory usage to a minimum.
Vertical and Horizontal Layouts
Compare physical and genetic maps in vertical view, then switch to horizontal view to drill down to the nucleotide level.
In-House Installation
Persephone can be set up on premise. Our team will provide detailed instructions and will guide you through the installation process. We can also help with data loading and software integration.
Customer-led Design
Our team will work with you to develop the exact features you need.
Drag-and-drop
Open local files in multiple formats, then visualize them alongside all the other data.
User Friendly
Persephone’s intuitive interface has been built based on suggestions from multiple researchers.
Visual BLAST
The users can run BLAST and evaluate its results graphically, integrated with the rest of the genomic data.
Export
Save displayed genomic features in various formats, including FASTA, Genbank, and CSV.
Want to host Persephone on your infrastructure and serve your own data?
Talk to us about a license
BTW, if you are from a University, you will get a heavily-discounted rate!
On-premise or Cloud installs
Floating License
- Full control and access to database
- Support and training for installation
- Support and training for loading data
- (optional) pre-populated database
- (optional) Customizations available
Collaboration
- Dedicated software engineering resources
- Dedicated support, training, and customizations
- Full control of system
- (optional) customized to integrate with in-house pipelines
- (optional) pre-populated database
This Full Demo provides access to the entire Persephone system (including the PersephoneShell data loader and the back end database).
Contact Us to put a no-cost Software Demo Trial License in place. We will walk you through the installation and the use of the system.
